Wednesday, February 4, 2026

Aging Septic Systems are Contaminating Water in Florida with Nitrogen and Pathogens: A Shallow Water Table and Porous Soil Allow it to Spread


      The type of septic system installed, how deep, and sometimes how large the leach field is, depends on the characteristics of the soil. Septic leach fields are installed as shallow as possible to take advantage of higher oxygen levels in the soil nearer the surface so that the aerobic bacteria can thrive to break down the organic matter in the effluent coming from the septic tank. They are also installed shallow to stay above the water table. Other types of systems do not utilize a leach field, but some type of chamber filled with mulch or sand where the water is treated. In Florida, the soil is generally quite porous, and the water table is high. This complicates septic system optimization and can lead to failed and dysfunctional systems where the effluent is not being adequately treated.






     Florida’s problem is mainly aging septic systems that are no longer functioning adequately. According to environmental scientist Iuliia Istratiy, reporting for the Sun Sentinel:

Florida has more than 2 million septic systems, one of the highest numbers in the country. Many of them were installed decades ago, long before today’s environmental standards and rapid population growth. While septic systems are often seen as a private household issue, taken together, they have become a major public and environmental concern."

     These systems were generally not designed to remove nitrogen, and with the porosity of the soils, the effluents are able to bring nitrogen into the local shallow groundwater and even into nearby canals, rivers, and coastal waters. Excess nitrogen feeds algae, reduces oxygen levels in water, and damages freshwater and coastal ecosystems. It also contributes to ongoing coastal issues like red tides and eutrophication. Florida is basically a coastal plain, a low-lying area where water can collect. The coastal regions are the most vulnerable. Rising sea levels, flooding, and storm surges can further allow the contaminated water to move around. Istratiy writes:

Florida has taken steps to address water quality problems, but progress in upgrading outdated septic systems has been slow and uneven. Replacing old systems or connecting homes to sewer lines can be expensive, yet the cost of doing nothing continues to grow. Environmental damage, health risks and economic losses place a much heavier burden on communities over time.”

Solving this problem will require coordinated action. State and local governments need to prioritize funding for septic-to-sewer conversions in the most vulnerable areas, improve maintenance and inspection requirements, and help homeowners manage the cost of necessary upgrades. Public awareness also plays a key role. When people understand how individual septic systems affect shared water resources, the issue becomes a matter of collective responsibility.”

     I have worked as a regulator and inspector in the past of household sewage treatment systems (ie, septic systems) in an area where it was common for some older systems and occasionally even some newer systems to fail. I know that for regular people, it becomes a significant economic issue. In modern times, it can be very expensive to replace a failing septic system, and it can even be financially inconvenient to pay to have it maintained and inspected. Thus, cost tends to slow down mitigation and replacement.

     In January 2025, Florida moved its onsite sewage program regulation and permitting for 16 counties from the County Health departments to the Department of Environmental Protection (DEP). Below is an update from the Florida DEP about the improved permitting and inspection numbers in the target counties.




     Researchers from Florida Atlantic University’s Harbor Branch Oceanographic Institute looked at water quality in southwest Florida, tracking microbes, and found that septic systems were a major contributor to water quality degradation. According to Florida Atlantic University:

“…there are about 39,768 “known” and about 57,054 “likely” septic systems in Southwest Florida’s Lee County (about 100,000 total). To identify sources of pollution contributing to the water quality woes, researchers examined septic system- groundwater- surface water couplings through the analysis of various parameters.”

      The researchers tracked microbes and nutrients and distinguished them into human and animal origins. Their research was published in September 2022 in the journal Science of the Total Environment. They utilized several tracers and indicators. One effective indicator for human waste was sucralose. The researchers found that human waste was definitely contributing to harmful algae blooms (HABs). One very important conclusion is that:

Most (>80%) water table depth measurements were too shallow to support septic system functioning (<1.07 m).”

     This basically means that more than 80% of the septic systems in this region are basically dysfunctional, or what we used to call “failing.”






     The study showed that both groundwater and surface water were significantly contaminated with septic system waste, from both pathogens and nitrogen. Pathogens are indicated by fecal bacteria indicators like coliform bacteria.

     The researchers concluded:

Urban water quality is complex because it is affected by myriad environmental, economic, and political issues. This means that resource managers must be able to identify sources contributing to water quality decline and then prioritize mitigation and abatement strategies. Due to the nature of human waste inputs (i.e., reactive nutrients, pathogens, bacteria, pharmaceuticals, etc.), improved wastewater infrastructure and management, including advanced wastewater treatment (nutrient removal), in …

 

 


References:

 

Aging septic systems fuel Florida’s growing water quality crisis. Opinion by Iuliia Istratiy. Tampa Bay Times. February 2, 2026. Aging septic systems fuel Florida’s growing water quality crisis | Column

Water Quality Woes in S.W. Florida Linked to Seeping Septic Systems. Gisele Galoustian. Florida Atlantic University News Desk. August 9, 2022. FAU | Water Quality Woes in S.W. Florida Linked to Seeping Septic Systems

The Onsite Sewage Program has moved to the Florida Department of Environmental Protection. Florida Department of Health. 2025. Septic Systems - Florida Department of Health

Program Update - Phase I Transition. Division of Water Resource Management. Onsite Sewage Program. Florida Department of Environmental Protection. Program Update - Phase I Transition | Florida Department of Environmental Protection

Septic system–groundwater–surface water couplings in waterfront communities contribute to harmful algal blooms in Southwest Florida. Rachel A. Brewton, Lisa B. Kreiger, Kevin N. Tyre, Diana Baladi, Lynn E. Wilking, Laura W. Herren, and Brian E. Lapointe. Science of The Total Environment. Volume 837, 1 September 2022, 155319. Septic system–groundwater–surface water couplings in waterfront communities contribute to harmful algal blooms in Southwest Florida - ScienceDirect

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       The type of septic system installed, how deep, and sometimes how large the leach field is, depends on the characteristics of the s...